PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.010G156600.1
Common NameB456_010G156600, LOC105771470
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 204aa    MW: 22773.5 Da    PI: 9.8861
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.010G156600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-1883133255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrd +    + +r +lg+f tae Aa a+++a+ +++g
  Gorai.010G156600.1  83 HYRGVRRRP-WGKYAAEIRDSTR---QgARMWLGTFETAEAAALAYDKAAYRMRG 133
                         8********.**********322...24*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.13E-2082142No hitNo description
Gene3DG3DSA:3.30.730.105.3E-3182142IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2283143IPR016177DNA-binding domain
SMARTSM003804.1E-3583147IPR001471AP2/ERF domain
PfamPF008477.7E-1383133IPR001471AP2/ERF domain
PROSITE profilePS5103223.70983141IPR001471AP2/ERF domain
PRINTSPR003671.2E-138495IPR001471AP2/ERF domain
PRINTSPR003671.2E-13123143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MTSHRAKKVR KESMVEVSQS QNMDHHLPLN ENDSQDMFIF QVLDEANAHH ALPLNNYCHQ  60
FQFQVTATNQ TTLEPARNSP KKHYRGVRRR PWGKYAAEIR DSTRQGARMW LGTFETAEAA  120
ALAYDKAAYR MRGSKALLNF PAEVSVEPSS VQRLRPNVSS KRLEETTCGS GSSSTVISFG  180
ASISESESKT TGSPLIKDQN RIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-3282145467ATERF1
3gcc_A8e-3282145467ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6095910.0JN609591.1 Gossypium hirsutum ERF7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448392.11e-153PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like
SwissprotO046812e-46PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A0D2UFF11e-153A0A0D2UFF1_G
STRINGPOPTR_0004s05100.14e-55(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2851733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.15e-32ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]